Skip to main content
Back to top
Ctrl
+
K
For users
Installation
Getting Started
Usage Examples
CANDLE Compliance Example
CANDLE Checkpoint Examples
API Reference
DATA_PREPROCESSING_UTILS
candle.data_preprocessing_utils.quantile_normalization
candle.data_preprocessing_utils.generate_cross_validation_partition
PYTORCH_UTILS
candle.pytorch_utils.set_pytorch_threads
candle.pytorch_utils.set_pytorch_seed
candle.pytorch_utils.get_pytorch_function
candle.pytorch_utils.build_pytorch_activation
candle.pytorch_utils.build_pytorch_optimizer
candle.pytorch_utils.pytorch_initialize
candle.pytorch_utils.pytorch_xent
candle.pytorch_utils.pytorch_mse
BENCHMARK_DEF
candle.benchmark_def.Benchmark
candle.benchmark_def.create_params
UQ_UTILS
candle.uq_utils.UQDistDict
candle.uq_utils.generate_index_distribution
candle.uq_utils.generate_index_distribution_from_fraction
candle.uq_utils.generate_index_distribution_from_blocks
candle.uq_utils.generate_index_distribution_from_block_list
candle.uq_utils.compute_limits
candle.uq_utils.fill_array
candle.uq_utils.compute_statistics_homoscedastic_summary
candle.uq_utils.compute_statistics_homoscedastic
candle.uq_utils.compute_statistics_heteroscedastic
candle.uq_utils.compute_statistics_quantile
candle.uq_utils.split_data_for_empirical_calibration
candle.uq_utils.compute_empirical_calibration_interpolation
GENERIC_UTILS
candle.generic_utils.Progbar
candle.generic_utils.get_from_module
candle.generic_utils.make_tuple
candle.generic_utils.func_dump
candle.generic_utils.func_load
candle.generic_utils.func_reconstruct_closure
candle.generic_utils.display_table
FEATURE_SELECTION_UTILS
candle.feature_selection_utils.select_features_by_missing_values
candle.feature_selection_utils.select_features_by_variation
candle.feature_selection_utils.select_decorrelated_features
UQ_KERAS_UTILS
candle.uq_keras_utils.AbstentionAdapt_Callback
candle.uq_keras_utils.Contamination_Callback
candle.uq_keras_utils.abstention_loss
candle.uq_keras_utils.sparse_abstention_loss
candle.uq_keras_utils.abstention_acc_metric
candle.uq_keras_utils.sparse_abstention_acc_metric
candle.uq_keras_utils.abstention_metric
candle.uq_keras_utils.acc_class_i_metric
candle.uq_keras_utils.abstention_acc_class_i_metric
candle.uq_keras_utils.abstention_class_i_metric
candle.uq_keras_utils.modify_labels
candle.uq_keras_utils.add_model_output
candle.uq_keras_utils.r2_heteroscedastic_metric
candle.uq_keras_utils.mae_heteroscedastic_metric
candle.uq_keras_utils.mse_heteroscedastic_metric
candle.uq_keras_utils.meanS_heteroscedastic_metric
candle.uq_keras_utils.heteroscedastic_loss
candle.uq_keras_utils.quantile_loss
candle.uq_keras_utils.triple_quantile_loss
candle.uq_keras_utils.quantile_metric
candle.uq_keras_utils.add_index_to_output
candle.uq_keras_utils.contamination_loss
candle.uq_keras_utils.mse_contamination_metric
candle.uq_keras_utils.mae_contamination_metric
candle.uq_keras_utils.r2_contamination_metric
CKPT_PYTORCH_UTILS
candle.ckpt_pytorch_utils.CandleCkptPyTorch
VIZ_UTILS
candle.viz_utils.plot_history
candle.viz_utils.plot_scatter
candle.viz_utils.plot_error
candle.viz_utils.plot_array
candle.viz_utils.plot_density_observed_vs_predicted
candle.viz_utils.plot_2d_density_sigma_vs_error
candle.viz_utils.plot_histogram_error_per_sigma
candle.viz_utils.plot_decile_predictions
candle.viz_utils.plot_calibration_interpolation
candle.viz_utils.plot_calibrated_std
candle.viz_utils.plot_contamination
candle.viz_utils.plot_metrics
CKPT_UTILS
candle.ckpt_utils.ModelType
candle.ckpt_utils.CandleCkptModel
candle.ckpt_utils.ParamType
candle.ckpt_utils.CandleCkpt
candle.ckpt_utils.ParamRequired
candle.ckpt_utils.ckpt_parser
candle.ckpt_utils.ckpt_defs
CKPT_KERAS_UTILS
candle.ckpt_keras_utils.CandleCkptKeras
CLR_KERAS_UTILS
candle.clr_keras_utils.CyclicLR
candle.clr_keras_utils.clr_check_args
candle.clr_keras_utils.clr_set_args
candle.clr_keras_utils.clr_callback
DATA_UTILS
candle.data_utils.to_categorical
candle.data_utils.convert_to_class
candle.data_utils.scale_array
candle.data_utils.impute_and_scale_array
candle.data_utils.drop_impute_and_scale_dataframe
candle.data_utils.discretize_dataframe
candle.data_utils.discretize_array
candle.data_utils.lookup
candle.data_utils.load_X_data
candle.data_utils.load_X_data2
candle.data_utils.load_Xy_one_hot_data
candle.data_utils.load_Xy_one_hot_data2
candle.data_utils.load_Xy_data2
candle.data_utils.load_Xy_data_noheader
candle.data_utils.load_csv_data
HELPER_UTILS
candle.helper_utils.fetch_file
candle.helper_utils.verify_path
candle.helper_utils.set_up_logger
candle.helper_utils.eval_string_as_list
candle.helper_utils.eval_string_as_list_of_lists
candle.helper_utils.str2bool
candle.helper_utils.keras_default_config
candle.helper_utils.set_seed
FILE_UTILS
candle.file_utils.get_file
candle.file_utils.validate_file
candle.file_utils.directory_tree_from_parameters
MODAC_UTILS
candle.modac_utils.get_file_from_modac
candle.modac_utils.register_file_to_modac
candle.modac_utils.authenticate_modac
candle.modac_utils.query_yes_no
candle.modac_utils.get_dataObject_modac_filesize
candle.modac_utils.get_dataObject_modac_md5sum
candle.modac_utils.get_dataObject_modac_meta
NOISE_UTILS
candle.noise_utils.add_noise_new
candle.noise_utils.add_noise
candle.noise_utils.label_flip
candle.noise_utils.label_flip_correlated
candle.noise_utils.add_gaussian_noise
candle.noise_utils.add_column_noise
candle.noise_utils.add_cluster_noise
PARSING_UTILS
candle.parsing_utils.ArgumentStruct
candle.parsing_utils.ListOfListsAction
candle.parsing_utils.ParseDict
candle.parsing_utils.ConfigDict
candle.parsing_utils.extract_keywords
candle.parsing_utils.check_flag_conflicts
candle.parsing_utils.check_file_parameters_exists
candle.parsing_utils.finalize_parameters
candle.parsing_utils.args_overwrite_config
candle.parsing_utils.get_choice
candle.parsing_utils.parse_from_dictlist
candle.parsing_utils.parse_common
KERAS_UTILS
candle.keras_utils.PermanentDropout
candle.keras_utils.LoggingCallback
candle.keras_utils.TerminateOnTimeOut
candle.keras_utils.CandleRemoteMonitor
candle.keras_utils.set_parallelism_threads
candle.keras_utils.set_seed
candle.keras_utils.get_function
candle.keras_utils.build_optimizer
candle.keras_utils.build_initializer
candle.keras_utils.xent
candle.keras_utils.r2
candle.keras_utils.mae
candle.keras_utils.mse
candle.keras_utils.covariance
candle.keras_utils.corr
candle.keras_utils.evaluate_autoencoder
candle.keras_utils.register_permanent_dropout
candle.keras_utils.compute_trainable_params
P1_UTILS
candle.P1_utils.calculate_concordance_correlation_coefficient
candle.P1_utils.generalization_feature_selection
candle.P1_utils.coxen_single_drug_gene_selection
candle.P1_utils.coxen_multi_drug_gene_selection
candle.P1_utils.generate_gene_set_data
candle.P1_utils.design_mat
candle.P1_utils.it_sol
candle.P1_utils.aprior
candle.P1_utils.bprior
candle.P1_utils.postmean
candle.P1_utils.postvar
candle.P1_utils.combat_batch_effect_removal
Tutorials
Writing candle compliant code
MNIST example
.. Cite CANDLE LIB
For developers
Contributor's Guide
GitHub Issues
Related
CANDLE Benchmarks
CANDLE Supervisor
IMPROVE Singularity
Repository
Suggest edit
Open issue
.rst
.pdf
candle.keras_utils.covariance
Contents
covariance()
candle.keras_utils.covariance
#
candle.keras_utils.
covariance
(
x
,
y
)
#
Contents
covariance()
